Licensing
Description
A mutant of the vacuolar proteinase A (ngPrAdelta295-331) (green) is a substrate of ER quality control (ERQC) mechanisms, as determined by the fact that it is retained in the ER (marked by Kar2; red) when degradation is blocked through deletion mutation of hrd1. S. cerevisiae mutant hrd1::KANMX (deletion mutation of hrd1) bearing ngPRdelta295-331-HA centromeric plasmid were fixed in 3.7% formaldehyde. The cell wall was removed by zymolyase digestion in 1.2M sorbitol and washed resuspended cells were applied to poly L-lysine coated slide, methanol (-20C) and acetone treated, and air dried. Primary antibodies HA.11 mAb (Covance) and polyclonal rabbit anti-Kar2p were applied in 0.05% Tween 20 followed by Alexa Fluor 488 goat anti–mouse and Alexa Fluor 594 goat anti–rabbit (Invitrogen) secondary antibodies. Slides were mounted in PBS, 90% glycerol and DAPI (blue). Cells were visualized using an inverted microscope (LSM 510 META; Carl Zeiss, Inc.) with a Plan Apochromat 100× 1.4 NA Ph3 objective (Carl Zeiss, Inc.) in immersion oil (Immersol 518F; Carl Zeiss, Inc.) at room temperature. Image acquisition was performed using standard photomultiplier tube with LSM 510. Images were archived using LSM 5 Image Examiner (Carl Zeiss, Inc.) and Photoshop (version 7.0; Adobe), and no additional software adjustments were performed on images after acquisition other than cropping. Image corresponds to Fig 1D in J Cell Biol. 2010. 188:707-716.
Biological Sources
- NCBI Organism Classification
- Saccharomyces cerevisiae
- (Baker's Yeast, Brewer's Yeast)
- Cell Line
- W303 hrd1::KANMX
- Cellular Component
- endoplasmic reticulum lumen
- nucleus
- endoplasmic reticulum membrane
- Hrd1p ubiquitin ligase ERAD-M complex
- Hrd1p ubiquitin ligase ERAD-L complex
Biological Context
- Biological Process
- SRP-dependent cotranslational protein targeting to membrane, translocation
- response to unfolded protein
- ER-associated protein catabolic process
- endoplasmic reticulum unfolded protein response
- Molecular Function
- ATPase activity
- unfolded protein binding
- ATP binding
- zinc ion binding
- ubiquitin-protein ligase activity
Attribution
- Names
- Kazue Kanehara
- Wei Xie
- Davis T.W. Ng
- Published
- J Cell Biol. 2010. 188: 707-716.
- Link
- http://jcb-dataviewer.rupress.org/jcb/...
- Pubmed
- 20212318
Grouping
This image is part of a group.Imaging
- Image Type
- recorded image
- Imaging Mode
- single-spot confocal microscopy
- Parameters Imaged
- fluorescence emission
- Source of Contrast
- compartmentalization of stain or label
- distribution of a specific protein
- Visualization Methods
- HA peptide tag
- primary antibody plus labeled secondary antibody
- 4',6-diamidino-2-phenylindole (DAPI)
- Alexa Fluor 488
- Alexa Fluor 594
- Data Qualifiers
- raw, unprocessed data
- suitable for spatial measurements
Sample Preparation
- Methods
- formaldehyde fixed tissue
- detergent permeabilized
- Relation To Intact Cell
- whole mounted tissue
Dimensions
| Spatial Axis | Image Size | Pixel Size |
|---|---|---|
| X | 512px | .045μm |
| Y | 512px | .045μm |
| Z | 1 | .4858μm |